| Issue Date | Title | Author(s) | Type | Access |
| 1 | 2007 | Applicability of ecological evaluation tools in estuarine ecosystems: the case of the lower Mondego estuary (Portugal) | Teixeira, H. ; Salas, F. ; Pardal, M. ; Marques, J. | article | openAccess |
| 2 | 2005 | Application of the exergy index as ecological indicator of organically enrichment areas in the Mar Menor lagoon (south-eastern Spain) | Salas, F. ; Marcos, C. ; Pérez-Ruzafa, A. ; Marques, J. C. | article | openAccess |
| 3 | 2007 | Applying quality status criteria to a temperate estuary before and after the mitigation measures to reduce eutrophication symptoms | Lillebø, A. I. ; Teixeira, H. ; Pardal, M. A. ; Marques, J. C. | article | openAccess |
| 4 | 2006 | Are Taxonomic Distinctness measures compliant to other ecological indicators in assessing ecological status? | Salas, F. ; Patrício, J. ; Marcos, C. ; Pardal, M. A. ; Pérez-Ruzafa, A. ; Marques, J. C. | article | openAccess |
| 5 | 2004 | Ascendency as an ecological indicator: a case study of estuarine pulse eutrophication | Patrício, J. ; Ulanowicz, R. ; Pardal, M. A. ; Marques, J. C. | article | openAccess |
| 6 | 2006 | Ascendency as Ecological Indicator for Environmental Quality Assessment at the Ecosystem Level: A Case Study | Patrício, J. ; Ulanowicz, R. ; Pardal, M. ; Marques, J. | article | openAccess |
| 7 | 19-Feb-2004 | Assessing environmental quality: a novel approach | Pardal, M. A. ; Cardoso, P. G. ; Sousa, J. P. ; Marques, J. C. ; Raffaelli, D. | article | openAccess |
| 8 | 2006 | Assessing the health of coastal marine ecosystems: A holistic approach based on sediment micro and meio-benthic measures | Vassallo, P. ; Fabiano, M. ; Vezzulli, L. ; Sandulli, R. ; Marques, J. C. ; Jørgensen, S. E. | article | openAccess |
| 9 | 2003 | Bacterioplankton dynamics in the Mondego estuary (Portugal) | Bacelar-Nicolau, P. ; Nicolau, L. B. ; Marques, J. C. ; Morgado, F. ; Pastorinho, R. ; Azeiteiro, U. M. | article | openAccess |
| 10 | Nov-2009 | A BGUC e as bibliotecas da Universidade de Coimbra | Fiolhais, Carlos ; Marques, João Carlos | bookPart | openAccess |
| 11 | 2005 | Biology, population dynamics and secondary production of the green crab Carcinus maenas (L.) in a temperate estuary | Baeta, A. ; Cabral, H. N. ; Neto, J. M. ; Marques, J. C. ; Pardal, M. A. | article | openAccess |
| 12 | 2005 | Calculations of exergy for organisms | Jørgensen, Sven Erik ; Ladegaard, Niels ; Debeljak, Marko ; Marques, João Carlos | article | openAccess |
| 13 | 2003 | Comparison of Talitrus saltator (Amphipoda, Talitridae) biology, dynamics, and secondary production in Atlantic (Portugal) and Mediterranean (Italy and Tunisia) populations | Marques, J. C. ; Gonçalves, S. C. ; Pardal, M. A. ; Chelazzi, L. ; Colombini, I. ; Fallaci, M. ; Bouslama, M. F. ; El Gtari, M. ; Charfi-Cheikhrouha, F. ; Scapini, F. | article | openAccess |
| 14 | 2003 | Comparison of the biology, dynamics, and secondary production of Talorchestia brito (Amphipoda, Talitridae) in Atlantic (Portugal) and Mediterranean (Tunisia) populations | Gonçalves, S. C. ; Marques, J. C. ; Pardal, M. A. ; Bouslama, M. F. ; El Gtari, M. ; Charfi-Cheikhrouha, F. | article | openAccess |
| 15 | 2005 | Competition for feeding in waders: a case study in an estuary of south temperate Europe (Mondego, Portugal) | Santos, Tiago Múrias dos ; Cabral, João Alexandre ; Lopes, Ricardo Jorge ; Pardal, Miguel ; Marques, João Carlos ; Goss-Custard, John | article | openAccess |
| 16 | 2002 | Degradability and Sediment Sorption of an Alcohol Polyglycol Ether Surfactant Putatively Useful for the Control of Red Swamp Crayfish in Rice Fields | Fonseca, Júlio C. ; Marques, João C. ; Madeira, Vítor M. C. | article | openAccess |
| 17 | 2009 | [delta]15N and [delta]13C in the Mondego estuary food web: Seasonal variation in producers and consumers | Baeta, Alexandra ; Pinto, Rute ; Valiela, Ivan ; Richard, Pierre ; Niquil, Nathalie ; Marques, João C. | article | openAccess |
| 18 | 11-Oct-2001 | Diversity, biodiversity, conservation, and sustainability | Marques, J. C. | article | openAccess |
| 19 | 2004 | Dynamic changes in seagrass assemblages under eutrophication and implications for recovery | Cardoso, P. G. ; Pardal, M. A. ; Lillebø, A. I. ; Ferreira, S. M. ; Raffaelli, D. ; Marques, J. C. | article | openAccess |
| 20 | 2000 | Ecologia alimentar e relações tróficas de nove espécies de peixes demersais dos Açores | Morato, Telmo | masterThesis | openAccess |
| 21 | 2006 | Ecological indicators performance during a re-colonisation field experiment and its compliance with ecosystem theories | Patrício, Joana ; Salas, Fuensanta ; Pardal, Miguel Ângelo ; Jørgensen, Sven Erik ; Marques, João Carlos | article | openAccess |
| 22 | 30-Apr-2009 | Ecological integrity assessment, ecosystem-based approach, and integrative methodologies: Are these concepts equivalent? | Borja, Angel ; Bricker, Suzanne B. ; Dauer, Daniel M. ; Demetriades, Nicolette T. ; Ferreira, João G. ; Forbes, Anthony T. ; Hutchings, Pat ; Jia, Xiaoping ; Kenchington, Richard ; Marques, João Carlos ; Zhu, Changbo | article | openAccess |
| 23 | 2008 | Ecological status assessment in the lower Eo estuary (Spain). The challenge of habitat heterogeneity integration: A benthic perspective | Paz, L. de ; Patrício, J. ; Marques, J. C. ; Borja, A. ; Laborda, A. J. | article | openAccess |
| 24 | 2002 | The effect of different primary producers on Hydrobia ulvae population dynamics: a case study in a temperate intertidal estuary | Cardoso, P. G. ; Lillebø, A. I. ; Pardal, M. A. ; Ferreira, S. M. ; Marques, J. C. | article | openAccess |
| 25 | 2005 | The effect of eutrophication abatement on the bivalve Scrobicularia plana | Verdelhos, T. ; Neto, J. M. ; Marques, J. C. ; Pardal, M. A. | article | openAccess |
| 26 | 28-Mar-2001 | The effect of salt marshes plants on the nutrient dynamics in the Mondego estuary (Portugal) | Batista, Ana Isabel Lillebo | doctoralThesis | embargoedAccess |
| 27 | 2006 | The Effect of Zostera noltii, Spartina maritima and Scirpus maritimus on Sediment Pore-water Profiles in a Temperate Intertidal Estuary | Lillebø, A. ; Flindt, M. ; Pardal, M. ; Marques, J. | article | openAccess |
| 28 | 2002 | Estimation of ecological exergy using weighing parameters determined from DNA contents of organisms – a case study | Fonseca, Júlio C. ; Pardal, Miguel A. ; Azeiteiro, Ulisses M. ; Marques, João C. | article | openAccess |
| 29 | 2004 | Evaluation of the applicability of a marine biotic index to characterize the status of estuarine ecosystems: the case of Mondego estuary (Portugal) | Salas, F. ; Neto, J. M. ; Borja, A. ; Marques, J. C. | article | openAccess |
| 30 | 2007 | The faunal role in the degradation of the common intertidal salt marsh plant Scirpus maritimus | Lillebø, A. ; Flindt, M. ; Pardal, M. ; Cardoso, P. ; Ferreira, S. ; Marques, J. | article | openAccess |
| 31 | 2006 | Feeding ecology of the green crab, Carcinus maenas (L., 1758) in a temperate estuary, Portugal | Baeta, Alexandra ; Cabral, Henrique N. ; Marques, João C. ; Pardal, Miguel A. | article | openAccess |
| 32 | 2006 | Feeding ecology, population structure and distribution of Pomatoschistus microps (Krøyer, 1838) and Pomatoschistus minutus (Pallas, 1770) in a temperate estuary, Portugal | Leitão, R. ; Martinho, F. ; Neto, J. M. ; Cabral, H. ; Marques, J. C. ; Pardal, M. A. | article | openAccess |
| 33 | 2009 | Feeding guild composition of a macrobenthic subtidal community along a depth gradient | Dolbeth, Marina ; Teixeira, Heliana ; Marques, João Carlos ; Pardal, Miguel Ângelo | article | openAccess |
| 34 | 5-Jul-2000 | Green macroalgae and seagrasses in a shallow eutrophic estuary (The Mondego Estuary, Portugal) : dynamics, controlling factors and possible evolutionary scenarios | Martins, Irene Isabel da Cruz | doctoralThesis | embargoedAccess |
| 35 | 2003 | Histochemistry and histology in planktonic ecophysiological processes determination in a temperate estuary (Mondego River estuary, Portugal) | Pastorinho, M. R. ; Antunes, C. P. ; Marques, J. C. ; Pereira, M. L. ; Azeiteiro, U. M. M. ; Morgado, F. M. | article | openAccess |
| 36 | 22-Nov-2005 | How well do ecological indicators assess environmental status? : case studies in coastal and estuarine ecosystems | Patrício, Joana Mateus | doctoralThesis | embargoedAccess |
| 37 | 2001 | Hydrodynamics as a Major Factor Controlling the Occurrence of Green Macroalgal Blooms in a Eutrophic Estuary: A Case Study on the Influence of Precipitation and River Management | Martins, I. ; Pardal, M. A. ; Lillebø, A. I. ; Flindt, M. R. ; Marques, J. C. | article | openAccess |
| 38 | 2000 | Impact of crayfish densities on wet seeded rice and the inefficiency of a non-ionic surfactant as an ecotechnological solution | Anastácio, P. M. ; Frias, A. F. ; Marques, J. C. | article | openAccess |
| 39 | 2003 | Impact of eutrophication and river management within a framework of ecosystem theories | Marques, João C. ; Nielsen, Søren N. ; Pardal, Miguel A. ; Jørgensen, Sven E. | article | openAccess |
| 40 | 18-Apr-2000 | Impact of eutrophication on the life cycle, population dynamics and production of Ampithoe valida (Amphipoda) along an estuarine spatial gradient (Mondego estuary, Portugal) | Pardal, M. A. ; Marques, J. C. ; Metelo, I. ; Lillebø, A. I. ; Flindt, M. R. | article | openAccess |
| 41 | 2000 | Impact of macroalgal blooms and wader predation on intertidal macroinvertebrates: experimental evidence from the Mondego estuary (Portugal) | Lopes, Ricardo J. ; Pardal, Miguel A. ; Marques, João C. | article | openAccess |
| 42 | 2005 | Impact of microphallid trematodes on the survivorship, growth, and reproduction of an isopod (Cyathura carinata) | Ferreira, S. M. ; Jensen, K. T. ; Martins, P. A. ; Sousa, S. F. ; Marques, J. C. ; Pardal, M. A. | article | openAccess |
| 43 | 2008 | Impacts of macroalgal spores on the dynamics of adult macroalgae in a eutrophic estuary: High versus low hydrodynamic seasons and long-term simulations for global warming scenarios | Martins, Irene ; Marcotegui, Aránzazu ; Marques, João Carlos | article | openAccess |
| 44 | 2001 | The influence of environmental factors on the population dynamics, reproductive biology and productivity of Echinogammarus marinus Leach (Amphipoda, Gammaridae) in the Mondego estuary (Portugal) | Maranhão, Paulo ; Bengala, Nuno ; Pardal, Miguel ; Marques, João Carlos | article | openAccess |
| 45 | 2003 | The influence of temperature and salinity on the duration of embryonic development, fecundity and growth of the amphipod Echinogammarus marinus Leach (Gammaridae) | Maranhão, Paulo ; Marques, João Carlos | article | openAccess |
| 46 | 9-Nov-2007 | Macrofaunal key crustaceans in Atlantic and Mediterranean exposed sandy beaches : does knowledge on key species bio-ecology have a role in assessing global changes? | Gonçalves, Sílvia Correia | doctoralThesis | openAccess |
| 47 | 2004 | Macroinvertebrate response to different species of macroalgal mats and the role of disturbance history | Cardoso, P. G. ; Pardal, M. A. ; Raffaelli, D. ; Baeta, A. ; Marques, J. C. | article | openAccess |
| 48 | Dec-2005 | Management of a shallow temperate estuary to control eutrophication: The effect of hydrodynamics on the system’s nutrient loading | Lillebø, A. I. ; Neto, J. M. ; Martins, I. ; Verdelhos, T. ; Leston, S. ; Cardoso, P. G. ; Ferreira, S. M. ; Marques, J. C. ; Pardal, M. A. | article | openAccess |
| 49 | 2006 | Mass balanced models of the food web in three areas along a gradient of eutrophication symptoms in the south arm of the Mondego estuary (Portugal) | Patrício, Joana ; Marques, João Carlos | article | openAccess |
| 50 | 24-Sep-2004 | Migration and winter dynamics of Dunlin Calidris alpina in Portugal | Lopes, Ricardo Jorge da Silva Pereira | doctoralThesis | embargoedAccess |
| 51 | 2006 | Migratory connectivity and temporal segregation of dunlin ( Calidris alpina ) in Portugal: evidence from morphology, ringing recoveries and mtDNA | Lopes, Ricardo ; Marques, João ; Wennerberg, Liv | article | openAccess |
| 52 | 2003 | A model for amphipod (Talitrus saltator) population dynamics | Anastácio, P. M. ; Gonçalves, S. C. ; Pardal, M. A. ; Marques, J. C. | article | openAccess |
| 53 | 2002 | A Model for the Growth of Opportunistic Macroalgae (Enteromorpha sp.) in Tidal Estuaries | Martins, I. ; Marques, J. C. | article | openAccess |
| 54 | 2001 | Modeling mosquitofish (Gambusia holbrooki) responses to Genapol OXD-080, a non-ionic surfactant, in rice fields | Cabral, J. A. ; Marques, J. C. ; Nielsen, S. N. | article | openAccess |
| 55 | 2008 | Modelling nutrient mass balance in a temperate meso-tidal estuary: Implications for management | Neto, João Magalhães ; Flindt, Mogens René ; Marques, João Carlos ; Pardal, Miguel Ângelo | article | openAccess |
| 56 | 2002 | Modelling the effects of salinity variation on Echinogammarus marinus Leach (Amphipoda, Gammaridae) density and biomass in the Mondego Estuary (Western Portugal) | Martins, Irene ; Maranhão, Paulo ; Marques, João Carlos | article | openAccess |
| 57 | 2007 | Monitoring of coastal and transitional waters under the E.U. Water Framework Directive | Ferreira, J. ; Vale, C. ; Soares, C. ; Salas, F. ; Stacey, P. ; Bricker, S. ; Silva, M. ; Marques, J. | article | openAccess |
| 58 | 2001 | N* electroproduction amplitudes in a model with dynamical confinement | Alberto, P. ; Fiolhais, M. ; Golli, B. ; Marques, J. | article | openAccess |
| 59 | 2000 | Nuclear DNA in the determination of weighing factors to estimate exergy from organisms biomass | Fonseca, Júlio C. ; Marques, João C. ; Paiva, Artur A. ; Freitas, Albertina M. ; Madeira, Vítor M. C. ; Jørgensen, Sven E. | article | openAccess |
| 60 | 2001 | Opinion – Thermodynamics and Eecosystem Theory, Case Studies from Hydrobiology | Jørgensen, S. E. ; Marques, J. C. | article | openAccess |
| 61 | 2007 | Opportunistic macroalgae metrics for transitional waters. Testing tools to assess ecological quality status in Portugal | Patrício, J. ; Neto, J. M. ; Teixeira, H. ; Marques, J. C. | article | openAccess |
| 62 | 2004 | Phosphorous dynamics in a temperate intertidal estuary | Lillebø, A. I. ; Neto, J. M. ; Flindt, M. R. ; Marques, J. C. ; Pardal, M. A. | article | openAccess |
| 63 | 2004 | Population dynamics of Cyathura carinata (Isopoda) in a eutrophic temperate estuary | Ferreira, S. M. ; Pardal, M. A. ; Lillebø, A. I. ; Cardoso, P. G. ; Marques, J. C. | article | openAccess |
| 64 | Jan-2006 | Population structure and species dynamics of Spisula solida, Diogenes pugilator and Branchiostoma lanceolatum along a temporal–spatial gradient in the south coast of Portugal | Dolbeth, M. ; Viegas, I. ; Martinho, F. ; Marques, J. C. ; Pardal, M. A. | article | openAccess |
| 65 | 2005 | Resilience of Hydrobia ulvae populations to anthropogenic and natural disturbances | Cardoso, P. G. ; Brandão, A. ; Pardal, M. A. ; Raffaelli, D. ; Marques, J. C. | article | openAccess |
| 66 | 2008 | Response of intertidal macrobenthic communities to long term human induced changes in the Eo estuary (Asturias, Spain): Implications for environmental management | Paz, L. de ; Neto, J. M. ; Marques, J. C. ; Laborda, A. J. | article | openAccess |
| 67 | 8-Nov-2002 | Resposta ecofisiológica de Echinogammarus marinus (Amphipoda, Grammaridae) a variações ambientais : desenvolvimento de um modelo ecológico de dinâmica populacional | Maranhão, Paulo Jorge de Sousa | doctoralThesis | embargoedAccess |
| 68 | 1-Sep-2008 | Review and evaluation of estuarine biotic indices to assess benthic condition | Pinto, Rute ; Patrício, Joana ; Baeta, Alexandra ; Fath, Brian D. ; Neto, João M. ; Marques, João Carlos | article | openAccess |
| 69 | 6-Apr-2000 | Risk assessment for a non-target species, mosquitofish (Gambusia holbrooki), of an alternative ecotechnological approach to control crayfish infestation in rice fields. | Cabral, João Alexandre Ferreira Abel dos Santos | doctoralThesis | embargoedAccess |
| 70 | 2009 | Sandy beach macrofaunal communities on the western coast of Portugal - Is there a steady structure under similar exposed conditions? | Gonçalves, Sílvia C. ; Anastácio, Pedro M. ; Pardal, Miguel A. ; Cardoso, Patrícia G. ; Ferreira, Susana M. ; Marques, João C. | article | openAccess |
| 71 | 2007 | Significant variations in the productivity of green macroalgae in a mesotidal estuary: Implications to the nutrient loading of the system and the adjacent coastal area | Martins, Irene ; Lopes, R. J. ; Lillebø, A. I. ; Neto, J. M. ; Pardal, M. A. ; Ferreira, J. G. ; Marques, J. C. | article | openAccess |
| 72 | 1-Sep-2008 | Size-dependent variations on the nutritional pathway of Bathymodiolus azoricus demonstrated by a C-flux model | Martins, Irene ; Colaço, Ana ; Dando, Paul R. ; Martins, Inês ; Desbruyères, Daniel ; Sarradin, Pierre-Marie ; Marques, João Carlos ; Serrão-Santos, Ricardo | article | openAccess |
| 73 | 2007 | Spartina maritima influence on the dynamics of the phosphorus sedimentary cycle in a warm temperate estuary (Mondego estuary, Portugal) | Lillebø, Ana ; Coelho, J. ; Flindt, M. ; Jensen, H. ; Marques, J. ; Pedersen, C. ; Pardal, M. | article | openAccess |
| 74 | 27-Dec-2008 | Spatial distribution of subtidal Nematoda communities along the salinity gradient in southern European estuaries | Adão, Helena ; Alves, Ana Sofia ; Patrício, Joana ; Neto, João Magalhães ; Costa, Maria José ; Marques, João Carlos | article | openAccess |
| 75 | 2002 | Structural changes in an estuary, described by models and using exergy as orientor | Jørgensen, Sven Erik ; Marques, João ; Nielsen, Søren Nors | article | openAccess |
| 76 | 2000 | Surfactant (Genapol OX-80) toxicity to Selenastrum capricornutum | Anastácio, P. M. ; Holten Lützhøft, H. -C. ; Halling-Sørensen, B. ; Marques, J. C. | article | openAccess |
| 77 | 2004 | Temporal and spatial change of exergy and ascendency in different benthic marine ecosystems | Fabiano, M. ; Vassallo, P. ; Vezzulli, L. ; Salvo, V. S. ; Marques, J. C. | article | openAccess |
| 78 | 2002 | Three selected ecological observations interpreted in terms of a thermodynamic hypothesis. Contribution to a general theoretical framework | Marques, João Carlos ; Jørgensen, Sven Erik | article | openAccess |
| 79 | 2006 | User-friendly guide for using benthic ecological indicators in coastal and marine quality assessment | Salas, F. ; Marcos, C. ; Neto, J. M. ; Patrício, J. ; Pérez-Ruzafa, A. ; Marques, J. C. | article | openAccess |
| 80 | 2007 | Zooplankton distribution and dynamics in a temperate shallow estuary | Marques, Sónia ; Pardal, M. ; Pereira, M. ; Gonçalves, F. ; Marques, J. ; Azeiteiro, U. | article | openAccess |
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