| Issue Date | Title | Author(s) | Type | Access |
| 1 | 2007 | Applying quality status criteria to a temperate estuary before and after the mitigation measures to reduce eutrophication symptoms | Lillebø, A. I. ; Teixeira, H. ; Pardal, M. A. ; Marques, J. C. | article | openAccess |
| 2 | 2007 | The faunal role in the degradation of the common intertidal salt marsh plant Scirpus maritimus | Lillebø, A. ; Flindt, M. ; Pardal, M. ; Cardoso, P. ; Ferreira, S. ; Marques, J. | article | openAccess |
| 3 | 2007 | Zooplankton distribution and dynamics in a temperate shallow estuary | Marques, Sónia ; Pardal, M. ; Pereira, M. ; Gonçalves, F. ; Marques, J. ; Azeiteiro, U. | article | openAccess |
| 4 | 2005 | Impact of microphallid trematodes on the survivorship, growth, and reproduction of an isopod (Cyathura carinata) | Ferreira, S. M. ; Jensen, K. T. ; Martins, P. A. ; Sousa, S. F. ; Marques, J. C. ; Pardal, M. A. | article | openAccess |
| 5 | 2002 | Estimation of ecological exergy using weighing parameters determined from DNA contents of organisms – a case study | Fonseca, Júlio C. ; Pardal, Miguel A. ; Azeiteiro, Ulisses M. ; Marques, João C. | article | openAccess |
| 6 | 2007 | Applicability of ecological evaluation tools in estuarine ecosystems: the case of the lower Mondego estuary (Portugal) | Teixeira, H. ; Salas, F. ; Pardal, M. ; Marques, J. | article | openAccess |
| 7 | 2006 | The Effect of Zostera noltii, Spartina maritima and Scirpus maritimus on Sediment Pore-water Profiles in a Temperate Intertidal Estuary | Lillebø, A. ; Flindt, M. ; Pardal, M. ; Marques, J. | article | openAccess |
| 8 | 2008 | Ecological status assessment in the lower Eo estuary (Spain). The challenge of habitat heterogeneity integration: A benthic perspective | Paz, L. de ; Patrício, J. ; Marques, J. C. ; Borja, A. ; Laborda, A. J. | article | openAccess |
| 9 | 2006 | Migratory connectivity and temporal segregation of dunlin ( Calidris alpina ) in Portugal: evidence from morphology, ringing recoveries and mtDNA | Lopes, Ricardo ; Marques, João ; Wennerberg, Liv | article | openAccess |
| 10 | 2006 | Are Taxonomic Distinctness measures compliant to other ecological indicators in assessing ecological status? | Salas, F. ; Patrício, J. ; Marcos, C. ; Pardal, M. A. ; Pérez-Ruzafa, A. ; Marques, J. C. | article | openAccess |
| 11 | 2006 | Assessing the health of coastal marine ecosystems: A holistic approach based on sediment micro and meio-benthic measures | Vassallo, P. ; Fabiano, M. ; Vezzulli, L. ; Sandulli, R. ; Marques, J. C. ; Jørgensen, S. E. | article | openAccess |
| 12 | 18-Apr-2000 | Impact of eutrophication on the life cycle, population dynamics and production of Ampithoe valida (Amphipoda) along an estuarine spatial gradient (Mondego estuary, Portugal) | Pardal, M. A. ; Marques, J. C. ; Metelo, I. ; Lillebø, A. I. ; Flindt, M. R. | article | openAccess |
| 13 | 2005 | The effect of eutrophication abatement on the bivalve Scrobicularia plana | Verdelhos, T. ; Neto, J. M. ; Marques, J. C. ; Pardal, M. A. | article | openAccess |
| 14 | 2005 | Application of the exergy index as ecological indicator of organically enrichment areas in the Mar Menor lagoon (south-eastern Spain) | Salas, F. ; Marcos, C. ; Pérez-Ruzafa, A. ; Marques, J. C. | article | openAccess |
| 15 | 2001 | Opinion – Thermodynamics and Eecosystem Theory, Case Studies from Hydrobiology | Jørgensen, S. E. ; Marques, J. C. | article | openAccess |
| 16 | 2007 | Opportunistic macroalgae metrics for transitional waters. Testing tools to assess ecological quality status in Portugal | Patrício, J. ; Neto, J. M. ; Teixeira, H. ; Marques, J. C. | article | openAccess |
| 17 | 2006 | User-friendly guide for using benthic ecological indicators in coastal and marine quality assessment | Salas, F. ; Marcos, C. ; Neto, J. M. ; Patrício, J. ; Pérez-Ruzafa, A. ; Marques, J. C. | article | openAccess |
| 18 | 2008 | Response of intertidal macrobenthic communities to long term human induced changes in the Eo estuary (Asturias, Spain): Implications for environmental management | Paz, L. de ; Neto, J. M. ; Marques, J. C. ; Laborda, A. J. | article | openAccess |
| 19 | 2004 | Temporal and spatial change of exergy and ascendency in different benthic marine ecosystems | Fabiano, M. ; Vassallo, P. ; Vezzulli, L. ; Salvo, V. S. ; Marques, J. C. | article | openAccess |
| 20 | 2005 | Competition for feeding in waders: a case study in an estuary of south temperate Europe (Mondego, Portugal) | Santos, Tiago Múrias dos ; Cabral, João Alexandre ; Lopes, Ricardo Jorge ; Pardal, Miguel ; Marques, João Carlos ; Goss-Custard, John | article | openAccess |
| 21 | 2001 | Hydrodynamics as a Major Factor Controlling the Occurrence of Green Macroalgal Blooms in a Eutrophic Estuary: A Case Study on the Influence of Precipitation and River Management | Martins, I. ; Pardal, M. A. ; Lillebø, A. I. ; Flindt, M. R. ; Marques, J. C. | article | openAccess |
| 22 | 19-Feb-2004 | Assessing environmental quality: a novel approach | Pardal, M. A. ; Cardoso, P. G. ; Sousa, J. P. ; Marques, J. C. ; Raffaelli, D. | article | openAccess |
| 23 | 2005 | Resilience of Hydrobia ulvae populations to anthropogenic and natural disturbances | Cardoso, P. G. ; Brandão, A. ; Pardal, M. A. ; Raffaelli, D. ; Marques, J. C. | article | openAccess |
| 24 | 2002 | A Model for the Growth of Opportunistic Macroalgae (Enteromorpha sp.) in Tidal Estuaries | Martins, I. ; Marques, J. C. | article | openAccess |
| 25 | 9-Nov-2007 | Macrofaunal key crustaceans in Atlantic and Mediterranean exposed sandy beaches : does knowledge on key species bio-ecology have a role in assessing global changes? | Gonçalves, Sílvia Correia | doctoralThesis | openAccess |
| 26 | 2009 | Feeding guild composition of a macrobenthic subtidal community along a depth gradient | Dolbeth, Marina ; Teixeira, Heliana ; Marques, João Carlos ; Pardal, Miguel Ângelo | article | openAccess |
| 27 | 11-Oct-2001 | Diversity, biodiversity, conservation, and sustainability | Marques, J. C. | article | openAccess |
